Package com.atgenomix.seqslab.piper.tags

Annotation Interface Dimension

@Documented
@Retention(RUNTIME)
@Target(TYPE)
@Repeatable(Dimensions.class)
public @interface Dimension

Indicates the computing resource requirements, types of workload and pipeline structures that an operator supports. This provides a runtime configuration hint for SeqsLab to execute the target operators. Specifies multiple dimensions if the operator supports multiple different workloads.

Required Element Summary

Required Elements

Modifier and Type	Required Element	Description
double	minMemoryPerCore	Minimal required memory in GB per CPU core for the target workloads.
int	parallelizationFactor	Typical number of dataframe partitions to scale the target workloads.
String[]	workloads	List of supported workloads, e.g.

Optional Element Summary

Optional Elements

Modifier and Type	Optional Element	Description
String[]	arguments
String[]	configurations
boolean	runOnGPU	Indicates the operator implementation can run on GPU and be executed with the RAPIDS Accelerator.

Element Details

workloads

String[] workloads

List of supported workloads, e.g. "Whole Genome Sequencing Alignment".

parallelizationFactor

int parallelizationFactor

Typical number of dataframe partitions to scale the target workloads.

minMemoryPerCore

double minMemoryPerCore

Minimal required memory in GB per CPU core for the target workloads.

configurations

String[] configurations

Default:

{}

arguments

String[] arguments

Default:

{}

runOnGPU

boolean runOnGPU

Indicates the operator implementation can run on GPU and be executed with the RAPIDS Accelerator.

Default:

false