Hierarchy For All Packages

Package Hierarchies:

• com.atgenomix.seqslab.piper.plugin.api,
• com.atgenomix.seqslab.piper.plugin.api.collector,
• com.atgenomix.seqslab.piper.plugin.api.executor,
• com.atgenomix.seqslab.piper.plugin.api.formatter,
• com.atgenomix.seqslab.piper.plugin.api.loader,
• com.atgenomix.seqslab.piper.plugin.api.transformer,
• com.atgenomix.seqslab.piper.plugin.api.writer,
• com.atgenomix.seqslab.piper.tags

Class Hierarchy

• java.lang.Object
  • java.util.Dictionary<K,V>
    • java.util.Hashtable<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
      • java.util.Properties
        • com.atgenomix.seqslab.piper.plugin.api.DataSource
  • com.atgenomix.seqslab.piper.plugin.api.OperatorContext (implements java.io.Serializable)
  • com.atgenomix.seqslab.piper.plugin.api.PiperContext (implements java.io.Serializable)
  • com.atgenomix.seqslab.piper.plugin.api.PluginContext (implements java.io.Serializable)

Interface Hierarchy

• java.lang.AutoCloseable
  • java.io.Closeable
    • com.atgenomix.seqslab.piper.plugin.api.Operator (also extends com.atgenomix.seqslab.piper.plugin.api.OperatorPipelineV3, java.io.Serializable)
      • com.atgenomix.seqslab.piper.plugin.api.collector.Collector (also extends org.apache.spark.sql.api.java.UDF0<R>)
        • com.atgenomix.seqslab.piper.plugin.api.collector.SupportsAggregation
        • com.atgenomix.seqslab.piper.plugin.api.collector.SupportsRepartitioning
      • com.atgenomix.seqslab.piper.plugin.api.executor.Executor
        • com.atgenomix.seqslab.piper.plugin.api.executor.SupportsFileLocalization (also extends org.apache.spark.sql.api.java.UDF1<T1,R>)
        • com.atgenomix.seqslab.piper.plugin.api.executor.SupportsTableLocalization (also extends org.apache.spark.sql.api.java.UDF1<T1,R>)
      • com.atgenomix.seqslab.piper.plugin.api.formatter.Formatter
        • com.atgenomix.seqslab.piper.plugin.api.formatter.SupportsUDF1<T1,R> (also extends org.apache.spark.sql.api.java.UDF1<T1,R>)
        • com.atgenomix.seqslab.piper.plugin.api.formatter.SupportsUDF2<T1,T2,R> (also extends org.apache.spark.sql.api.java.UDF2<T1,T2,R>)
        • com.atgenomix.seqslab.piper.plugin.api.formatter.SupportsUDF3<T1,T2,T3,R> (also extends org.apache.spark.sql.api.java.UDF3<T1,T2,T3,R>)
        • com.atgenomix.seqslab.piper.plugin.api.formatter.SupportsUDF4<T1,T2,T3,T4,R> (also extends org.apache.spark.sql.api.java.UDF4<T1,T2,T3,T4,R>)
        • com.atgenomix.seqslab.piper.plugin.api.formatter.SupportsUDF5<T1,T2,T3,T4,T5,R> (also extends org.apache.spark.sql.api.java.UDF5<T1,T2,T3,T4,T5,R>)
      • com.atgenomix.seqslab.piper.plugin.api.loader.Loader (also extends org.apache.spark.sql.api.java.UDF0<R>)
        • com.atgenomix.seqslab.piper.plugin.api.loader.SupportsCopyToLocal
        • com.atgenomix.seqslab.piper.plugin.api.loader.SupportsHadoopDFS
        • com.atgenomix.seqslab.piper.plugin.api.loader.SupportsReadPartitions
        • com.atgenomix.seqslab.piper.plugin.api.loader.SupportsScanPartitions
      • com.atgenomix.seqslab.piper.plugin.api.transformer.Transformer (also extends org.apache.spark.sql.api.java.UDF1<T1,R>)
        • com.atgenomix.seqslab.piper.plugin.api.transformer.SupportsGroupWithinPartitions
        • com.atgenomix.seqslab.piper.plugin.api.transformer.SupportsOrdering
      • com.atgenomix.seqslab.piper.plugin.api.writer.Writer (also extends org.apache.spark.sql.api.java.UDF2<T1,T2,R>)
        • com.atgenomix.seqslab.piper.plugin.api.writer.SupportsSaveToBLOB
        • com.atgenomix.seqslab.piper.plugin.api.writer.SupportsSaveToHTTP
        • com.atgenomix.seqslab.piper.plugin.api.writer.SupportsSaveToJDBC
• com.atgenomix.seqslab.piper.plugin.api.collector.CollectorSupport
• com.atgenomix.seqslab.piper.plugin.api.executor.ExecutorSupport
• com.atgenomix.seqslab.piper.plugin.api.formatter.FormatterSupport
• com.atgenomix.seqslab.piper.plugin.api.loader.LoaderSupport
• com.atgenomix.seqslab.piper.plugin.api.OperatorPipelineV3
  • com.atgenomix.seqslab.piper.plugin.api.Operator (also extends java.io.Closeable, java.io.Serializable)
    • com.atgenomix.seqslab.piper.plugin.api.collector.Collector (also extends org.apache.spark.sql.api.java.UDF0<R>)
      • com.atgenomix.seqslab.piper.plugin.api.collector.SupportsAggregation
      • com.atgenomix.seqslab.piper.plugin.api.collector.SupportsRepartitioning
    • com.atgenomix.seqslab.piper.plugin.api.executor.Executor
      • com.atgenomix.seqslab.piper.plugin.api.executor.SupportsFileLocalization (also extends org.apache.spark.sql.api.java.UDF1<T1,R>)
      • com.atgenomix.seqslab.piper.plugin.api.executor.SupportsTableLocalization (also extends org.apache.spark.sql.api.java.UDF1<T1,R>)
    • com.atgenomix.seqslab.piper.plugin.api.formatter.Formatter
      • com.atgenomix.seqslab.piper.plugin.api.formatter.SupportsUDF1<T1,R> (also extends org.apache.spark.sql.api.java.UDF1<T1,R>)
      • com.atgenomix.seqslab.piper.plugin.api.formatter.SupportsUDF2<T1,T2,R> (also extends org.apache.spark.sql.api.java.UDF2<T1,T2,R>)
      • com.atgenomix.seqslab.piper.plugin.api.formatter.SupportsUDF3<T1,T2,T3,R> (also extends org.apache.spark.sql.api.java.UDF3<T1,T2,T3,R>)
      • com.atgenomix.seqslab.piper.plugin.api.formatter.SupportsUDF4<T1,T2,T3,T4,R> (also extends org.apache.spark.sql.api.java.UDF4<T1,T2,T3,T4,R>)
      • com.atgenomix.seqslab.piper.plugin.api.formatter.SupportsUDF5<T1,T2,T3,T4,T5,R> (also extends org.apache.spark.sql.api.java.UDF5<T1,T2,T3,T4,T5,R>)
    • com.atgenomix.seqslab.piper.plugin.api.loader.Loader (also extends org.apache.spark.sql.api.java.UDF0<R>)
      • com.atgenomix.seqslab.piper.plugin.api.loader.SupportsCopyToLocal
      • com.atgenomix.seqslab.piper.plugin.api.loader.SupportsHadoopDFS
      • com.atgenomix.seqslab.piper.plugin.api.loader.SupportsReadPartitions
      • com.atgenomix.seqslab.piper.plugin.api.loader.SupportsScanPartitions
    • com.atgenomix.seqslab.piper.plugin.api.transformer.Transformer (also extends org.apache.spark.sql.api.java.UDF1<T1,R>)
      • com.atgenomix.seqslab.piper.plugin.api.transformer.SupportsGroupWithinPartitions
      • com.atgenomix.seqslab.piper.plugin.api.transformer.SupportsOrdering
    • com.atgenomix.seqslab.piper.plugin.api.writer.Writer (also extends org.apache.spark.sql.api.java.UDF2<T1,T2,R>)
      • com.atgenomix.seqslab.piper.plugin.api.writer.SupportsSaveToBLOB
      • com.atgenomix.seqslab.piper.plugin.api.writer.SupportsSaveToHTTP
      • com.atgenomix.seqslab.piper.plugin.api.writer.SupportsSaveToJDBC
• com.atgenomix.seqslab.piper.plugin.api.Pipeline
• com.atgenomix.seqslab.piper.plugin.api.PipelineTask
• com.atgenomix.seqslab.piper.plugin.api.PiperPlugin
• com.atgenomix.seqslab.piper.plugin.api.PiperValue
• java.io.Serializable
  • com.atgenomix.seqslab.piper.plugin.api.Operator (also extends java.io.Closeable, com.atgenomix.seqslab.piper.plugin.api.OperatorPipelineV3)
    • com.atgenomix.seqslab.piper.plugin.api.collector.Collector (also extends org.apache.spark.sql.api.java.UDF0<R>)
      • com.atgenomix.seqslab.piper.plugin.api.collector.SupportsAggregation
      • com.atgenomix.seqslab.piper.plugin.api.collector.SupportsRepartitioning
    • com.atgenomix.seqslab.piper.plugin.api.executor.Executor
      • com.atgenomix.seqslab.piper.plugin.api.executor.SupportsFileLocalization (also extends org.apache.spark.sql.api.java.UDF1<T1,R>)
      • com.atgenomix.seqslab.piper.plugin.api.executor.SupportsTableLocalization (also extends org.apache.spark.sql.api.java.UDF1<T1,R>)
    • com.atgenomix.seqslab.piper.plugin.api.formatter.Formatter
      • com.atgenomix.seqslab.piper.plugin.api.formatter.SupportsUDF1<T1,R> (also extends org.apache.spark.sql.api.java.UDF1<T1,R>)
      • com.atgenomix.seqslab.piper.plugin.api.formatter.SupportsUDF2<T1,T2,R> (also extends org.apache.spark.sql.api.java.UDF2<T1,T2,R>)
      • com.atgenomix.seqslab.piper.plugin.api.formatter.SupportsUDF3<T1,T2,T3,R> (also extends org.apache.spark.sql.api.java.UDF3<T1,T2,T3,R>)
      • com.atgenomix.seqslab.piper.plugin.api.formatter.SupportsUDF4<T1,T2,T3,T4,R> (also extends org.apache.spark.sql.api.java.UDF4<T1,T2,T3,T4,R>)
      • com.atgenomix.seqslab.piper.plugin.api.formatter.SupportsUDF5<T1,T2,T3,T4,T5,R> (also extends org.apache.spark.sql.api.java.UDF5<T1,T2,T3,T4,T5,R>)
    • com.atgenomix.seqslab.piper.plugin.api.loader.Loader (also extends org.apache.spark.sql.api.java.UDF0<R>)
      • com.atgenomix.seqslab.piper.plugin.api.loader.SupportsCopyToLocal
      • com.atgenomix.seqslab.piper.plugin.api.loader.SupportsHadoopDFS
      • com.atgenomix.seqslab.piper.plugin.api.loader.SupportsReadPartitions
      • com.atgenomix.seqslab.piper.plugin.api.loader.SupportsScanPartitions
    • com.atgenomix.seqslab.piper.plugin.api.transformer.Transformer (also extends org.apache.spark.sql.api.java.UDF1<T1,R>)
      • com.atgenomix.seqslab.piper.plugin.api.transformer.SupportsGroupWithinPartitions
      • com.atgenomix.seqslab.piper.plugin.api.transformer.SupportsOrdering
    • com.atgenomix.seqslab.piper.plugin.api.writer.Writer (also extends org.apache.spark.sql.api.java.UDF2<T1,T2,R>)
      • com.atgenomix.seqslab.piper.plugin.api.writer.SupportsSaveToBLOB
      • com.atgenomix.seqslab.piper.plugin.api.writer.SupportsSaveToHTTP
      • com.atgenomix.seqslab.piper.plugin.api.writer.SupportsSaveToJDBC
  • org.apache.spark.sql.api.java.UDF0<R>
    • com.atgenomix.seqslab.piper.plugin.api.collector.Collector (also extends com.atgenomix.seqslab.piper.plugin.api.Operator)
      • com.atgenomix.seqslab.piper.plugin.api.collector.SupportsAggregation
      • com.atgenomix.seqslab.piper.plugin.api.collector.SupportsRepartitioning
    • com.atgenomix.seqslab.piper.plugin.api.loader.Loader (also extends com.atgenomix.seqslab.piper.plugin.api.Operator)
      • com.atgenomix.seqslab.piper.plugin.api.loader.SupportsCopyToLocal
      • com.atgenomix.seqslab.piper.plugin.api.loader.SupportsHadoopDFS
      • com.atgenomix.seqslab.piper.plugin.api.loader.SupportsReadPartitions
      • com.atgenomix.seqslab.piper.plugin.api.loader.SupportsScanPartitions
  • org.apache.spark.sql.api.java.UDF1<T1,R>
    • com.atgenomix.seqslab.piper.plugin.api.executor.SupportsFileLocalization (also extends com.atgenomix.seqslab.piper.plugin.api.executor.Executor)
    • com.atgenomix.seqslab.piper.plugin.api.executor.SupportsTableLocalization (also extends com.atgenomix.seqslab.piper.plugin.api.executor.Executor)
    • com.atgenomix.seqslab.piper.plugin.api.formatter.SupportsUDF1<T1,R> (also extends com.atgenomix.seqslab.piper.plugin.api.formatter.Formatter)
    • com.atgenomix.seqslab.piper.plugin.api.transformer.Transformer (also extends com.atgenomix.seqslab.piper.plugin.api.Operator)
      • com.atgenomix.seqslab.piper.plugin.api.transformer.SupportsGroupWithinPartitions
      • com.atgenomix.seqslab.piper.plugin.api.transformer.SupportsOrdering
  • org.apache.spark.sql.api.java.UDF2<T1,T2,R>
    • com.atgenomix.seqslab.piper.plugin.api.formatter.SupportsUDF2<T1,T2,R> (also extends com.atgenomix.seqslab.piper.plugin.api.formatter.Formatter)
    • com.atgenomix.seqslab.piper.plugin.api.writer.Writer (also extends com.atgenomix.seqslab.piper.plugin.api.Operator)
      • com.atgenomix.seqslab.piper.plugin.api.writer.SupportsSaveToBLOB
      • com.atgenomix.seqslab.piper.plugin.api.writer.SupportsSaveToHTTP
      • com.atgenomix.seqslab.piper.plugin.api.writer.SupportsSaveToJDBC
  • org.apache.spark.sql.api.java.UDF3<T1,T2,T3,R>
    • com.atgenomix.seqslab.piper.plugin.api.formatter.SupportsUDF3<T1,T2,T3,R> (also extends com.atgenomix.seqslab.piper.plugin.api.formatter.Formatter)
  • org.apache.spark.sql.api.java.UDF4<T1,T2,T3,T4,R>
    • com.atgenomix.seqslab.piper.plugin.api.formatter.SupportsUDF4<T1,T2,T3,T4,R> (also extends com.atgenomix.seqslab.piper.plugin.api.formatter.Formatter)
  • org.apache.spark.sql.api.java.UDF5<T1,T2,T3,T4,T5,R>
    • com.atgenomix.seqslab.piper.plugin.api.formatter.SupportsUDF5<T1,T2,T3,T4,T5,R> (also extends com.atgenomix.seqslab.piper.plugin.api.formatter.Formatter)
• com.atgenomix.seqslab.piper.plugin.api.transformer.TransformerSupport
• com.atgenomix.seqslab.piper.plugin.api.writer.WriterSupport

Annotation Interface Hierarchy

• com.atgenomix.seqslab.piper.tags.DeveloperApi (implements java.lang.annotation.Annotation)
• com.atgenomix.seqslab.piper.tags.Dimension (implements java.lang.annotation.Annotation)
• com.atgenomix.seqslab.piper.tags.Dimensions (implements java.lang.annotation.Annotation)
• com.atgenomix.seqslab.piper.tags.FeatureAfterCall (implements java.lang.annotation.Annotation)
• com.atgenomix.seqslab.piper.tags.FeatureBeforeCall (implements java.lang.annotation.Annotation)

Enum Class Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
    • com.atgenomix.seqslab.piper.plugin.api.PiperValue.Type