Index

A B C D E F G I L N O P R S T V W
All Classes and Interfaces|All Packages|Serialized Form

G

get(String) - Method in class com.atgenomix.seqslab.piper.plugin.api.OperatorContext

Get the property value

getAccessTier() - Method in class com.atgenomix.seqslab.piper.plugin.api.DataSource

Retrieve the access tier of the data source, e.g.

getArray() - Method in interface com.atgenomix.seqslab.piper.plugin.api.PiperValue

Retrieve the value as an array of PiperValue.

getBoolean() - Method in interface com.atgenomix.seqslab.piper.plugin.api.PiperValue

Retrieve the value as a Boolean.

getConf() - Method in class com.atgenomix.seqslab.piper.plugin.api.PiperContext

Get the information of execution environment and configuration.

getDataframe() - Method in interface com.atgenomix.seqslab.piper.plugin.api.PiperValue

Retrieve the value as a Pair of URL and its Spark Dataframe.

getDataset(String) - Method in class com.atgenomix.seqslab.piper.plugin.api.PiperContext

Obtain the dataset object value of an input variable identified by fully-qualified name.

getDatasets() - Method in interface com.atgenomix.seqslab.piper.plugin.api.Pipeline

Get the settings of File inputs.

getDataSource() - Method in interface com.atgenomix.seqslab.piper.plugin.api.writer.Writer

Obtains the data access information after the output DataFrame is successfully saved.

getDictionary() - Method in interface com.atgenomix.seqslab.piper.plugin.api.PiperValue

Retrieve the value as a list of NamedValue objects with key as a String.

getDouble() - Method in interface com.atgenomix.seqslab.piper.plugin.api.PiperValue

Retrieve the value as a Double.

getFile() - Method in interface com.atgenomix.seqslab.piper.plugin.api.PiperValue

Retrieve the value as a Pair of path and SeqsLab DRS object.

getInteger() - Method in interface com.atgenomix.seqslab.piper.plugin.api.PiperValue

Retrieve the value as an Integer.

getName() - Method in interface com.atgenomix.seqslab.piper.plugin.api.Operator

Get the operator name that is used to uniquely specify the operator configuration of task operator pipelines.

getOperatorContext() - Method in interface com.atgenomix.seqslab.piper.plugin.api.Operator

Get the OperatorContext containing a list of properties in the form of NamedValue objects associated with this operator object.

getOptions() - Method in class com.atgenomix.seqslab.piper.plugin.api.DataSource

Retrieve the access options associated with this data source, e.g.

getProperties() - Method in interface com.atgenomix.seqslab.piper.plugin.api.executor.SupportsTableLocalization

Retrieves one or more NamedValue properties to set into the delta table.

getProperties() - Method in class com.atgenomix.seqslab.piper.plugin.api.OperatorContext

Get the properties

getProperty(String) - Method in class com.atgenomix.seqslab.piper.plugin.api.PluginContext

Calls the Hashtable method get.

getRegion() - Method in class com.atgenomix.seqslab.piper.plugin.api.DataSource

Retrieve the data center region, from which the data source will be accessed.

getSortExprs(Dataset<Row>) - Method in interface com.atgenomix.seqslab.piper.plugin.api.transformer.SupportsOrdering

Get the sorting expressions within each partition, ex: df.col("seq_id").asc().

getString() - Method in interface com.atgenomix.seqslab.piper.plugin.api.PiperValue

Retrieve the value as a String.

getTask(String) - Method in class com.atgenomix.seqslab.piper.plugin.api.PiperContext

Obtain the pipeline task of an input or output variable identified by fully-qualified name.

getTasks() - Method in interface com.atgenomix.seqslab.piper.plugin.api.Pipeline

Get the settings of a pipeline task.

getType() - Method in class com.atgenomix.seqslab.piper.plugin.api.DataSource

Retrieve type of the access method to the data source, e.g.

getType() - Method in interface com.atgenomix.seqslab.piper.plugin.api.PiperValue

Get the concrete type of this PiperValue object.

getUrl() - Method in class com.atgenomix.seqslab.piper.plugin.api.DataSource

Retrieve the access URL to the datasets.

A B C D E F G I L N O P R S T V W
All Classes and Interfaces|All Packages|Serialized Form