Index

A B C D E F G I L N O P R S T V W
All Classes and Interfaces|All Packages|Serialized Form

P

Pipeline - Interface in com.atgenomix.seqslab.piper.plugin.api

An interface represents a complete configuration of workflow task including input parameters, dataset connection, as well as localization, computation, and delocalization workload processes.

PipelineTask - Interface in com.atgenomix.seqslab.piper.plugin.api

An interface represents the localization, computation, and delocalization workload processes in a pipeline task of a given variable identified by FQN (Fully Qualified Name).

piper - Variable in class com.atgenomix.seqslab.piper.plugin.api.PluginContext

An object used in all operations of a workflow task execution.

PiperContext - Class in com.atgenomix.seqslab.piper.plugin.api

An object used in all operations of a workflow task execution.

PiperContext(SparkSession, Pipeline) - Constructor for class com.atgenomix.seqslab.piper.plugin.api.PiperContext

Creates a context object with the specified Spark session and pipeline configuration.

PiperPlugin - Interface in com.atgenomix.seqslab.piper.plugin.api

A plugin that can be dynamically loaded into a SeqsLab piper application.

PiperValue - Interface in com.atgenomix.seqslab.piper.plugin.api

An interface represents value of primitive types, e.g.

PiperValue.Type - Enum Class in com.atgenomix.seqslab.piper.plugin.api

Concrete types of all supported workflow parameters

PluginContext - Class in com.atgenomix.seqslab.piper.plugin.api

An object returned when initializing this SeqsLab piper.

PluginContext(PiperContext) - Constructor for class com.atgenomix.seqslab.piper.plugin.api.PluginContext

Creates a plugin context object with Seqslab piper context.

properties - Variable in class com.atgenomix.seqslab.piper.plugin.api.OperatorContext

A property map that contains NamedValue objects including those specific to the operator and other properties set by upstream pipeline operators.

properties - Variable in class com.atgenomix.seqslab.piper.plugin.api.PluginContext

A persistent set of plugin-specific properties.

A B C D E F G I L N O P R S T V W
All Classes and Interfaces|All Packages|Serialized Form